(*: equal contributions)
1. Y. Kim and Y. Yang, "Supervised cryo-EM tomography denoising enabled by physics-based image simulation", Appl. Phys. Lett. 128, 203701 (2026). [Link]
2. S. Hong, J. Oh, J. Park, W. Cho, S. Lee, C. Ophus, Y. Kim, H. Yang, SB. Lee, and Y. Yang, "Spatial Correlations of Charge Density Wave Order across the Transition in 2H-NbSe2", Phys. Rev. Lett. 136, 016504 (2026). [Link]
3. W. Cho, J. Cha, Y.-G. Kang, D. H. D. Lee, J. Oh, D. Kim, S. Yer, J. Lee, H. Hong, Y. Yang, Y. Kim, M. J. Han, and H. Yang, "Polymorphic Spin Ordering in a Single-Crystalline Cobalt-Doped Fe3GaTe2", ACS Nano 19, 41033-41043 (2025). [Link]
4. Y. Kim, C. Kim, Y. Yang, and H. Ihee, "Exploiting anisotropic orientation in Nanoparticle-Aided Cryo-Electron microscopy sampling", Methods 243, 54-65 (2025). [Link]
5. C. Jeong, J. Lee, H. Jo, KH. Lee, SJ. Lee, C. Ophus, P. Ercius, EA. Cho, and Y. Yang, "Atomic-scale 3D structural dynamics and functional degradation of Pt alloy nanocatalysts during the oxygen reduction reaction", Nat. Commun. 16, 8026 (2025). [Link]
6. H.-S. Park, S. Cheon, Y.-J. Kwon, M. Kang, J. Suh, S.-Y. Park, Y. Yang, and C.-H. Yang, "Quantitative Control of Oxygen Non-Stoichiometry and Negative Raman Chemical Shift During Topotactic Phase Transition in a Ca-Doped BiFeO3 Thin-Film", Adv. Sci. 12, e02439 (2025). [Link]
7. D. Kim, J.-W. Lee, J. Lim, S. Choi, K. Acharya, S. Oh, J. Oh, T. R. Paudel, Y. Yang, K. Eom, S. Lee, and H. Lee, "Highly stable two-level current fluctuation in complex oxide heterostructures", Nat. Commun. 16, 5459 (2025). [Link]
8. J. Lee and Y. Yang, "Advancing atomic electron tomography with neural networks", Appl. Microsc. 55, 7 (2025). [Link]
9. H. Kim, H. Hwang, J. Kim, J. Park, S. Hong, S. Kim, Y. Yang, and H. Song, "Cysteine-Induced Multi-Petal Growth on Gold Nanostructures as SERS Substrates and for Electrochemical CO2 Reduction and Glucose Oxidation", ACS Appl. Nano Mater. 8, 10788 (2025). [Link]
10. Y. Choi, G. Kang, S. Kim, Y. Cho, J. Oh, D. Kim, J. Choe, J. M. Yuk, P.-P. Choi, Y. Yang, S.-Y. Chung, C. W. Ahn, J. Lim, and S. Hong, "Multiscale Materials Imaging and Spectroscopy for Battery Materials", EcoMat 7, e70016 (2025). [Link]
11. E. Lee, H. Jin, H. Jo, M. Kim, J. H. Park, J. Baik, J. S. Park, J. -H. Jang, S. Kim, D. W. Lee, J. Choi, J. K. Ryu, D. Choi, J. Kim, S. M. Kim, Y.-E. Sung, K.-S. Lee, D. Ahn, Y. Yang, D. W. Chun, and S. J. Yoo, "Suppressing Metal Dissolution in Multi-Grained Catalysts through Intragrain Atomic Ordering for Stable Fuel Cells", Adv. Mater. 37, 2504059 (2025). [Link]
12. B. Kang, U. Choi, T. S. Jung, S. Noh, G.-H. Kim, U. Seo, M. Park, J.-H. Choi, M. J. Kim, G. Ji, S. Song, H. Jo, S. Hong, N. X. Duong, S. Samanta, H.-S. Kim, T. H. Kim, Y. Yang, S. Park, J. M. Ok, J.-W. Yoo, J. H. Kim, and C. Sohn, "Optical detection of bond-dependent and frustrated spin in the two-dimensional cobalt-based honeycomb antiferromagnet Cu3Co2SbO6", Nat. Commun. 16, 1323 (2025). [Link]
13. H. Hong, X. Chen, W. Cho, H. Y. Yoo, J. Oh, M. Kim, G. Hwang, Y. Yang, L. Sun, Z. Wang, and H. Yang, "Dynamic Convolutional Neural Networks Based on Adaptive 2D Memristors", Adv. Funct. Mater. 35, 2422321 (2025). [Link]
14. S. Ryou, S. Mo, D. Kim, S. Choi, J. Oh, Y. Yang, K. Eom, and H. Lee, "Atomic-Scale Interface Modification in Complex Oxide Heterojunctions for Near-Infrared Photodetection", ACS Nano 18, 34606 (2024). [Link]
15. Yao Yang, J. Zhou, Z. Zhao, G. Sun, S. Moniri, C. Ophus, Yongsoo Yang, Z. Wei, Y. Yuan, C. Zhu, Y. Liu, Q. Sun, Q. Jia, H. Heinz, J. Ciston, P. Ercius, P. Sautet, Y. Huang, and J. Miao, "Atomic-scale identification of active sites of oxygen reduction nanocatalysts", Nat. Catal. 7, 796-806 (2024). [Link]
16. W. Cho, Y.-G. Kang, J. Cha, D. H. D. Lee, D. H. Kiem, J. Oh, Y. Joo, S. Yer, D. Kim, J. Park, C. Kim, Y. Yang, Y. Kim, M. J. Han and H. Yang, "Singular Hall Response from a Correlated Ferromagnetic Flat Nodal-Line Semimetal", Adv. Mater. 37, 2402040 (2024). [Link]
17. C. Jeong, J. Lee, H. Jo, J. Oh, H. Baik, K.-J. Go, J. Son, S.-Y. Choi, S. Prosandeev, L. Bellaiche, and Y. Yang, "Revealing the three-dimensional arrangement of polar topology in nanoparticles", Nat. Commun. 15, 3887 (2024). [Link]
18. J. Park, C. Jeong, M. Na, Y. Oh, K.-S. Lee, Y. Yang, and H. R. Byon, "Subnanometer Cu Clusters on Porous Ag Enhancing Ethanol Production in Electrochemical CO2 Reduction", ACS Catal. 14, 3198-3207 (2024). [Link]
19. J. Lee, M. Lee, Y. Park, C. Ophus, and Y. Yang, "Multislice Electron Tomography Using Four-Dimensional Scanning Transmission Electron Microscopy", Phys. Rev. Applied 19, 054062 (2023). [Link]
20. C. Kim*, Y. Kim*, S. J. Lee, S. R. Yun, J. Choi, S. O. Kim, Y. Yang, and H. Ihee, "Visualizing Heterogeneous Protein Conformations with Multi-Tilt Nanoparticle-Aided Cryo-Electron Microscopy Sampling", Nano Lett. 23, 3334 (2023). [Link]
21. H. Jo, D. H. Wi, T. Lee, Y. Kwon, C. Jeong, J. Lee, H. Baik, A. J. Pattison, W. Theis, C. Ophus, P. Ercius, Y.-L. Lee, S. Ryu, S. W. Han and Y. Yang, "Direct strain correlations at the single-atom level in three-dimensional core-shell interface structures", Nat. Commun. 13, 5957 (2022). [Link]
22. J. S. Lim, H.-H. Nahm, M. Campanini, J. Lee, Y.-J. Kim, H.-S. Park, J. Suh, J. Jung, Y. Yang, T. Y. Koo, M. D. Rossell, Y.-H. Kim and C.-H. Yang, "Critical ionic transport across an oxygen-vacancy ordering transition", Nat. Commun. 13, 5130 (2022). [Link]
23. S. Lee, J. Jeon, K. Eom, C. Jeong, Y. Yang, J.-Y. Park, C.-B. Eom and H. Lee, "Variance-aware weight quantization of multi-level resistive switching devices based on Pt/LaAlO3/SrTiO3 heterostructures", Sci. Rep. 12, 9068 (2022). [Link]
24. J. Hong, J.-H. Bae, H. Jo, H.-Y. Park, S. Lee, S. J. Hong, H. Chun, M. K. Cho, J. Kim, J. Kim, Y. Son, H. Jin, J.-Y. Suh, S.-C. Kim, H.-K. Roh, K. H. Lee, H.-S. Kim, K. Y. Chung, C. W. Yoon, K. Lee, S. H. Kim, J.-P. Ahn, H. Baik, G. H. Kim, B. Han, S. Jin, T. Hyeon, J. Park, C. Y. Son, Y. Yang, Y.-S. Lee, S. J. Yoo and D. W. Chun, "Metastable hexagonal close-packed palladium hydride in liquid cell TEM", Nature 603, 631-636 (2022). [Link]
25. J. Lee, C. Jeong, T. Lee, S. Ryu, and Y. Yang, "Direct Observation of Three-Dimensional Atomic Structure of Twinned Metallic Nanoparticles and Their Catalytic Properties", Nano Lett. 22, 665-672 (2022). [Link]
26. S. Lee, H. Ha, K. T. Bae, S. Kim, H. Choi, J. Lee, J. H. Kim, J. Seo, J. S. Choi, Y.-R. Jo, B.-J. Kim, Y. Yang, K. T. Lee, H. Y. Kim, and W. Jung, "A measure of active interfaces in supported catalysts for high-temperature reactions", Chem 8, 1-21 (2022). [Link]
27. H. Ki, J. Jo, Y. Kim, T. W. Kim, C. Kim, Y. Kim, C. W. Kim, S. Muniyappan, S. J. Lee, Y. Kim, H. M. Kim, Y. Yang, Y. M. Rhee, and H. Ihee, "Uncovering the Conformational Distribution of a Small Protein with Nanoparticle-Aided Cryo-Electron Microscopy Sampling", J. Phys. Chem. Lett. 12, 6565 (2021). [Link]
28. J. Lee, C. Jeong and, Y. Yang, "Single-atom level determination of 3-dimensional surface atomic structure via neural network-assisted atomic electron tomography", Nat. Commun. 12, 1962 (2021). [Link]
29. S. Hong, C. H. Liow, J. M. Yuk, H. R. Byon, Y. Yang, E. Cho, J. Yeom, G. Park, H. Kang, S. Kim, Y. Shim, M. Na, C. Jeong, G. Hwang, H. Kim, H. Kim, S. Eom, S. Cho, H. Jun, Y. Lee, A. Baucour, K. Bang, M. Kim, S. Yun, J. Ryu, Y. Han, A. Jetybayeva, P.-P. Choi, J. C. Agar, S. V. Kalinin, P. W. Voorhees, P. Littlewood, and H. M. Lee, "Reducing Time to Discovery: Materials and Molecular Modeling, Imaging, Informatics, and Integration" ACS Nano 15, 3971-3995 (2021). [Link]
30. X. Tian, D. S. Kim, S. Yang, C. J. Ciccarino, Y. Gong, Y. Yang, Y. Yang, B. Duschatko, Y. Yuan, P. M. Ajayan, J. Carlos Idrobo, P. Narang, and J. Miao, "Correlating the three-dimensional atomic defects and electronic properties of two-dimensional transition metal dichalcogenides", Nat. Mater. 19, 867 (2020). [Link]
31. J. Zhou, Y. Yang, P. Ercius, and J. Miao, "Atomic electron tomography in three and four dimensions", MRS Bull. 45, 290 (2020). [Link]
32. J. Zhou*, Y. Yang*, Y. Yang, D. S. Kim, A. Yuan, X. Tian, C. Ophus, F. Sun, A. K. Schmid, M. Nathanson, H. Heinz, Q. An, H. Zeng, P. Ercius, and J. Miao, "Observing crystal nucleation in four dimensions using atomic electron tomography", Nature 570, 500 (2019). [Link]
33. A. Pryor, Jr., A. Rana, R. Xu, J. A. Rodriguez, Y. Yang, M. Gallagher-Jones, H. Jiang, K. Kanhaiya, M. Nathanson, J. Park, S. Kim, S. Kim, D. Nam, Y. Yue, J. Fan, Z. Sun, B. Zhang, D. F. Gardner, C. S. B. Dias, Y. Joti, T. Hatsui, T. Kameshima, Y. Inubushi, K. Tono, J. Y. Lee, M. Yabashi, C. Song, T. Ishikawa, H. C. Kapteyn, M. M. Murnane, H. Heinz, and J. Miao, "Single-shot 3D coherent difractive imaging of core-shell nanoparticles with elemental specifcity", Sci. Rep. 8:8284 (2018). [Link]
34. A. Pryor Jr.*, Y. Yang*, A. Rana, M. Gallagher-Jones, J. Zhou, Y. H. Lo, G. Melinte, W. Chiu, J. A. Rodriguez, and J. Miao, "GENFIRE: A generalized Fourier iterative reconstruction algorithm for high-resolution 3D imaging", Sci. Rep. 7, 10409 (2017). [Link]
35. Y. Yang*, C.-C. Chen*, M. C. Scott*, C. Ophus*, R. Xu, A. Pryor Jr., L. Wu, F. Sun, W. Theis, J. Zhou, M. Eisenbach, P. R. C. Kent, R. F. Sabirianov, H. Zeng, P. Ercius, and J. Miao, "Deciphering chemical order/disorder and material properties at the single-atom level", Nature 542, 75-79 (2017). [Link]
36. N. Senabulya, N. Feldberg, R. A. Makin, Y. Yang, G. Shi, C. M. Jones, E. Kioupakis, J. Mathis, R. Clarke, and S. M. Durbin, "Stabilization of orthorhombic phase in single-crystal ZnSnN2 films", AIP Adv. 6, 075019 (2016). [Link]
37. B. D. A. Levin, E. Padgett, C.-C. Chen, M. C. Scott, R. Xu, W. Theis, Y. Jiang, Y. Yang, C. Ophus, H. Zhang, D.-H. Ha, D. Wang, Y. Yu, H. D. Abruña, R. D. Robinson, P. Ercius, L. F. Kourkoutis, J. Miao, D. A. Muller, and R. Hovden, "Nanomaterial datasets to advance tomography in scanning transmission electron microscopy", Sci. Data 3, 160041 (2016). [Link]
38. Y. Yang*, C. Beekman*, W. Siemons, C. M. Schlepütz, N. Senabulya, R. Clarke, and H. M. Christen, "Origin of thickness dependence of structural phase transition temperatures in highly strained BiFeO3 thin films", APL Mater. 4, 036106 (2016). [Link]
39. R. Xu, C.-C. Chen, L. Wu, M. C. Scott, W. Theis, C. Ophus, M. Bartels, Y. Yang, H. Ramezani-Dakhel, M. R. Sawaya, H. Heinz, L. D. Marks, P. Ercius, and J. Miao , "Three-Dimensional Coordinates of Individual Atoms in Materials Revealed by Electron Tomography", Nature Mater. 14, 1099-1103 (2015). [Link]
40. H. Dixit, C. Beekman, C. M. Schlepütz, W. Siemons, Y. Yang, N. Senabulya, R. Clarke, M. Chi, H. M. Christen, and V. R. Cooper, "Understanding Strain-Induced Phase Transformations in BiFeO3 Thin Films", Adv. Sci. 2, 1500041 (2015). [Link]
41. O. Shalev, S. Biswas, Y. Yang, T. Eddir, W. Lu, R. Clarke, and M. Shtein, "Growth and modelling of spherical crystalline morphologies of molecular materials", Nat. Commun. 5:5204, (2014). [Link]
42. S. Biswas, Y. Yang, C. M. Schlepütz, N. Geva, R. L. Headrick, R. Pindak, R. Clarke, and M. Shtein, "Mapping of morphology and electronic properties of air-printed pentacene films", Adv. Funct. Mater. 24, 3907 (2014). [Link]
43. Y. Yang, C. M. Schlepütz, C. Adamo, D. G. Schlom, and R. Clarke, "Untilting BiFeO3: the influence of substrate boundary conditions in ultrathin BiFeO3 on SrTiO3", APL Mater. 1, 052102 (2013). [Link]
44. I. Cour, P. V. Chinta, C. M. Schlepütz, Y. Yang, R. Clarke, R. Pindak, and R. L. Headrick, "Origin of stress and enhanced carrier transport in solution-cast organic semiconductor films", J. Appl. Phys. 114, 093501 (2013). [Link]
45. Y. Yang, C. M. Schlepütz, F. Bellucci, M. W. Allen, S. M. Durbin, and R. Clarke, "Structural Investigation of ZnO O-polar (000-1) Surfaces and Schottky Interfaces", Surf. Sci. 610, 22 (2013). [Link]
46. Y. S. Chai, Y. S. Oh, L. J. Wang, N. Manivannan, S. M. Feng, Y. S. Yang, L. Q. Yan, C. Q. Jin, and K. H. Kim, "Intrinsic ferroelectric polarization of orthorhombic manganites with E-type spin order", Phys. Rev. B 85, 184406 (2012). [Link]
47. C. M. Schlepütz, Y. Yang, R. Heinhold, N. S. Husseini, H.-S. Kim, M. W. Allen, S. M. Durbin, and R. Clarke, "Presence of a (1×1) oxygen overlayer on ZnO (0001) surfaces and at Schottky interfaces", J. Phys.: Condens. Matter 24, 905007 (2012). [Link]
48. S. M. Feng, Y. S. Chai, J. L. Zhu, N. Manivannan, Y. S. Oh, L. J. Wang, Y. S. Yang, C. Q. Jin, and K. H. Kim, "Determination of the intrinsic ferroelectric polarization in orthorhombic HoMnO3", New J. Phys. 12, 073006 (2010). [Link]